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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8769409_8769716_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8769409 - 8769716
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCGGTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCCCACCAATT
Flanking Amino Acid:
VGRKPGNVRKGNPVAAGSRR
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
35
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
71.7
0.49
0.9
61.5
40.1
Minor 5ss
42.6
-0.8
2.8
58.3
46.4
Minor BPS
45.5
-0.2
2.1
68
42.5

Associated Gene:

Gene:
NEURL1B
Ensembl Gene ID:
ENSAPLG00000014967
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040631
8701060 - 8769804
68745