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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8769409_8781994_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8769409 - 8781994
Intron Length:
12586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCCGGTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCCCACCAATT
Flanking Amino Acid:
ARRGQHSGFQGNPVAAGSRR
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
71.7
0.49
0.9
61.5
40.1
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
45.5
-0.2
2.1
68
42.5

Associated Gene:

Gene:
NEURL1B
Ensembl Gene ID:
ENSAPLG00000014967
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020195
8701060 - 8782112
81053