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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8781441_8781994_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8781441 - 8781994
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TGTTTGTTGATT
Flanking Amino Acid:
ARRGQHSGFQDPLESTRKGD
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
74.7
0.56
0.9
65.8
40.9
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
57.5
0.32
2.1
78.89
37.8

Associated Gene:

Gene:
NEURL1B
Ensembl Gene ID:
ENSAPLG00000014967
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028184
8701060 - 8782112
81053