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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8837277_8837396_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8837277 - 8837396
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGGTGCTGACCG
Flanking Amino Acid:
SSCGTPLYDQGGPVEILPFL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
75.8
0.58
0.9
65.6
41
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
42.2
-0.7
2.1
44.43
47.2

Associated Gene:

Gene:
DUSP1
Ensembl Gene ID:
ENSAPLG00000015094
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015738
8835484 - 8838053
2570