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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8866798_8894210_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8866798 - 8894210
Intron Length:
27413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTGGTAGA
5'SS Class:
major
3'SS Sequence:
TCCTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTTCCTCTACT
Flanking Amino Acid:
PRALFLLLSKISVCCCLFIL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.2
63.8
42.3
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
87.1
0.83
0.7
79.7
32.2
Minor 5ss
31.8
-2.1
2.8
34.6
34.9
Minor BPS
72.2
0.78
1.8
93.02
35.2

Associated Gene:

Gene:
ERGIC1
Ensembl Gene ID:
ENSAPLG00000015229
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037607
8866650 - 8922053
55404