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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8887920_8894210_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8887920 - 8894210
Intron Length:
6291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCCTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTTCCTCTACT
Flanking Amino Acid:
LTQPTYTGAIISVCCCLFIL
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.7
38.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
87.1
0.83
0.7
79.7
32.2
Minor 5ss
37.9
-1.4
2.7
47.5
36
Minor BPS
72.2
0.78
1.8
93.02
35.2

Associated Gene:

Gene:
ERGIC1
Ensembl Gene ID:
ENSAPLG00000015229
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015884
8865394 - 8922270
56877