Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8912200_8913234_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8912200 - 8913234

Intron Length:

1035

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTATGTATT

5'SS Class:

weak_major

3'SS Sequence:

TTTCTGACTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TAATTTATACTT

Flanking Amino Acid:

LEGADKLSSNPLASHDYILK

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.3

74.8

41.3

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

80.4

0.68

0.9

74.4

35.1

Minor 5ss

49.6

-0

2.5

73.1

36.3

Minor BPS

47.7

-0.1

1.8

66.11

Associated Gene:

Gene:

ERGIC1

Ensembl Gene ID:

ENSAPLG00000015229

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015884

8865394 - 8922270

56877

ENSAPLT00000037607

8866650 - 8922053

55404