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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8927772_8928464_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8927772 - 8928464
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTC
5'SS Class:
weak_major
3'SS Sequence:
TGTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTTTGGGAACA
Flanking Amino Acid:
MPIRKDDEVQVVRGHYKGQQ
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.9
36.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82.4
0.73
0.8
77.7
31
Minor 5ss
72.3
0.75
1.7
78.8
35.5
Minor BPS
43.7
-0.4
2.6
64.34
42.1

Associated Gene:

Gene:
RPL26
Ensembl Gene ID:
ENSAPLG00000015384
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016032
8926477 - 8930947
4471