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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_8933370_8937720_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8933370 - 8937720
Intron Length:
4351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GGTTGTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TGTTCTCTGTTT
Flanking Amino Acid:
LVTCAVCCYLFWLIAILAQL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
77
0.61
1
69.6
41.6
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
40.7
-0.6
3.5
72.08
39.4

Associated Gene:

Gene:
ATP6V0E1
Ensembl Gene ID:
ENSAPLG00000015489
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016134
8931725 - 8937814
6090