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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_902607_903827_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
902607 - 903827
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTAACTAAAAA
Flanking Amino Acid:
DGDKGEHGDEGPQGRTGNPG
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79
0.65
0.8
70.7
40.5
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
52.1
0.06
2
70.75
40.8

Associated Gene:

Gene:
C1QTNF2
Ensembl Gene ID:
ENSAPLG00000008595
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008932
901993 - 904076
2084