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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9053896_9063767_F

Intron Information:

Intron Rank:
123739
Intron Class:
major
Intron Phase:
Intron Coordinates:
9053896 - 9063767
Intron Length:
9872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016722
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043312
9046925 - 9076315
29391