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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9063851_9089414_F

Intron Information:

Intron Rank:
123737
Intron Class:
major
Intron Phase:
Intron Coordinates:
9063851 - 9089414
Intron Length:
25564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATCTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.4
0.71
0.8
78.3
34.1
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
57
0.3
1.8
76.89
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016722
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037703
9046925 - 9089523
42599