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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_90929_91314_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
90929 - 91314
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTGCTT
5'SS Class:
weak_major
3'SS Sequence:
CCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GATGTCTCACCA
Flanking Amino Acid:
NKGNVLRKAKEWEKKQT*
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56
0.14
1.4
57.3
47
Major BPS
79
0.72
1
69
38.9
Major PPT
85.7
0.8
0.7
80.5
24.8
Minor 5ss
31.1
-2.2
3.6
48.3
47.2
Minor BPS
46.6
-0.2
1.9
57.03
42.2

Associated Gene:

Gene:
AFAP1L1
Ensembl Gene ID:
ENSAPLG00000011997
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012526
83218 - 91338
8121