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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9136948_9138767_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9136948 - 9138767
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
GTCTTTGTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TCTTTGTTCAAG
Flanking Amino Acid:
LRNGLRQSVIQSGMLEAGVD
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
69.3
0.43
1.1
67.1
43
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
43.8
-0.6
2.5
55.39
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002435
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002444
9136749 - 9139219
2471