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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_922704_923129_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
922704 - 923129
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATGA
5'SS Class:
major
3'SS Sequence:
TTTCTATCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTGTCTCTGAGA
Flanking Amino Acid:
WGEEEPNSQTERDRNSEDED
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
62.8
38.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.3
0.75
0.7
81.7
29
Minor 5ss
39.5
-1.2
3.1
53
44.8
Minor BPS
49.6
-0
2
66.57
40.3

Associated Gene:

Gene:
SLU7
Ensembl Gene ID:
ENSAPLG00000008133
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008508
917262 - 927759
10498