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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_923178_924652_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
923178 - 924652
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTCTGCTGATGT
Flanking Amino Acid:
ELASGKLEQVNSPRHQWGEE
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
82.1
0.72
0.9
77.3
37
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
42.1
-0.5
2.3
59.91
49.3

Associated Gene:

Gene:
SLU7
Ensembl Gene ID:
ENSAPLG00000008133
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008508
917262 - 927759
10498