About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9265294_9265915_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9265294 - 9265915
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATATC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAAAAATAAATT
Flanking Amino Acid:
AESKSYFPPKGYAFLLFQDE
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.6
35.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
88.1
0.86
0.6
84.7
22.9
Minor 5ss
39.2
-1.2
2.9
46
42.5
Minor BPS
42.3
-0.5
1.9
55.93
39.5

Associated Gene:

Gene:
CPEB4
Ensembl Gene ID:
ENSAPLG00000022911
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035613
9233355 - 9271522
38168