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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9267449_9270889_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9267449 - 9270889
Intron Length:
3441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTT
Flanking Amino Acid:
QLQHGEIDKRVEVKPYVLDD
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.1
38.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.7
0.71
0.9
76.6
36.7
Minor 5ss
38.9
-1.2
3.3
48.7
47
Minor BPS
55.5
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
CPEB4
Ensembl Gene ID:
ENSAPLG00000022911
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035613
9233355 - 9271522
38168