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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_926955_927595_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
926955 - 927595
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATATCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATCTTTTACA
Flanking Amino Acid:
NAPAEVDEEGKDINPHIPQY
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.8
0.74
0.9
76.7
36.6
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
66.9
0.52
1.6
74.44
37.2

Associated Gene:

Gene:
SLU7
Ensembl Gene ID:
ENSAPLG00000008133
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019309
917262 - 927759
10498
ENSAPLT00000008508
917262 - 927759
10498