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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9283815_9285417_F

Intron Information:

Intron Rank:
150431
Intron Class:
major
Intron Phase:
Intron Coordinates:
9283815 - 9285417
Intron Length:
1603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GCTATCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
78.1
36.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
75.1
0.57
0.8
73.4
30.8
Minor 5ss
37.7
-1.4
3.6
54.6
44.9
Minor BPS
58
0.33
1.7
72.79
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030854
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020970
9282550 - 9290756
8207