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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9285507_9286994_F

Intron Information:

Intron Rank:
150432
Intron Class:
major
Intron Phase:
Intron Coordinates:
9285507 - 9286994
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATGCTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
49.7
-0
2.1
65.29
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030854
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020970
9282550 - 9290756
8207