About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9289748_9290729_F

Intron Information:

Intron Rank:
150434
Intron Class:
major
Intron Phase:
Intron Coordinates:
9289748 - 9290729
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TACCACTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.7
35.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
45
-0.5
2.5
51.2
45.5
Minor BPS
52
0.14
2
71.79
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030854
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020970
9282550 - 9290756
8207