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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_929398_929824_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
929398 - 929824
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
ATTAGCTCAAGT
Flanking Amino Acid:
QENQPCTAKKVAEKAAGLES
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
73
0.52
1.1
78.7
33.6
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
47.6
-0.1
2.2
71.48
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007970
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008273
928833 - 931303
2471