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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_930876_931238_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
930876 - 931238
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTCTAACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTATTTCTAACT
Flanking Amino Acid:
VETEELSWESNFLQSTADFI
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.9
37.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.5
0.71
0.8
78
35.1
Minor 5ss
33.9
-1.8
3.2
41.7
40.3
Minor BPS
61.6
0.44
1.6
77.99
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007970
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008273
928833 - 931303
2471