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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9314237_9334115_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9314237 - 9334115
Intron Length:
19879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTAACATTATCC
Flanking Amino Acid:
FTDGVTERLKVTILISLALA
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.1
0.68
0.7
75.8
26.3
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
49.5
-0
1.9
62.65
41.8

Associated Gene:

Gene:
NSG2
Ensembl Gene ID:
ENSAPLG00000014133
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014722
9300838 - 9336130
35293