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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9365929_9367577_F

Intron Information:

Intron Rank:
125347
Intron Class:
major
Intron Phase:
Intron Coordinates:
9365929 - 9367577
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAATTT
5'SS Class:
major
3'SS Sequence:
GTTTCTCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.9
36.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71.2
0.48
1
66.9
38.4
Minor 5ss
41.8
-0.9
3.5
64.3
47.2
Minor BPS
65.5
0.56
1.6
82.37
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017504
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032951
9365135 - 9368028
2894