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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9440177_9450070_R

Intron Information:

Intron Rank:
155612
Intron Class:
major
Intron Phase:
Intron Coordinates:
9440177 - 9450070
Intron Length:
9894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
CTGTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTTTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
85.5
0.8
0.8
79.9
32.2
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027162
9440094 - 9450842
10749