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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9446261_9454363_F

Intron Information:

Intron Rank:
144954
Intron Class:
major
Intron Phase:
Intron Coordinates:
9446261 - 9454363
Intron Length:
8103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGATCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.2
35.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
34.7
-1.7
3.1
40.6
45.1
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028165
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033473
9445478 - 9457527
12050
ENSAPLT00000030180
9445478 - 9457527
12050