About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9455122_9457239_F

Intron Information:

Intron Rank:
144958
Intron Class:
major
Intron Phase:
Intron Coordinates:
9455122 - 9457239
Intron Length:
2118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TAACTCTTAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
81.9
0.72
0.8
80.8
31.2
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
61.8
0.45
1.6
75.69
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028165
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033473
9445478 - 9457527
12050