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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9480668_9485185_F

Intron Information:

Intron Rank:
142634
Intron Class:
major
Intron Phase:
Intron Coordinates:
9480668 - 9485185
Intron Length:
4518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTACTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.3
0.82
0.7
84.8
29.8
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
56.2
0.27
2
81.42
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026873
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028162
9480409 - 9489038
8630
ENSAPLT00000022215
9480409 - 9487410
7002