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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9528186_9538656_R

Intron Information:

Intron Rank:
137273
Intron Class:
major
Intron Phase:
Intron Coordinates:
9528186 - 9538656
Intron Length:
10471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCAAG
5'SS Class:
major
3'SS Sequence:
GGCATTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGATCTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
68.8
43.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
69.8
0.45
1
62
39.8
Minor 5ss
34.1
-1.8
2.7
39.7
45.9
Minor BPS
69.5
0.69
1.5
82.23
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021351
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029910
9527725 - 9542848
15124