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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9562704_9563170_R

Intron Information:

Intron Rank:
141225
Intron Class:
major
Intron Phase:
Intron Coordinates:
9562704 - 9563170
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATAT
5'SS Class:
major
3'SS Sequence:
TTGTTGCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
77.7
33.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
68.7
0.42
1
68
38.8
Minor 5ss
35
-1.7
3.1
47.6
47.9
Minor BPS
53.7
0.19
2
74.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023318
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038819
9561766 - 9563460
1695