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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9581256_9587401_R

Intron Information:

Intron Rank:
140114
Intron Class:
major
Intron Phase:
Intron Coordinates:
9581256 - 9587401
Intron Length:
6146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.3
0.75
0.8
81.4
35.2
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
64.6
0.54
1.5
79.17
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022763
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026648
9581074 - 9593562
12489