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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9583482_9587401_R

Intron Information:

Intron Rank:
140122
Intron Class:
major
Intron Phase:
Intron Coordinates:
9583482 - 9587401
Intron Length:
3920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CAGCTCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.8
0.63
0.9
69.9
40.9
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
63.8
0.51
1.3
69.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022763
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040045
9581074 - 9587858
6785