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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_959153_989070_F

Intron Information:

Intron Rank:
131235
Intron Class:
major
Intron Phase:
Intron Coordinates:
959153 - 989070
Intron Length:
29918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTGTTTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.2
0.57
0.9
74.3
35.6
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
66.4
0.6
1.3
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020500
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039582
958936 - 989619
30684