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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9592827_9596419_R

Intron Information:

Intron Rank:
140118
Intron Class:
major
Intron Phase:
Intron Coordinates:
9592827 - 9596419
Intron Length:
3593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
TTCTCACCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTTCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
71.7
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.3
0.68
0.8
73.6
30.3
Minor 5ss
38.3
-1.3
2.8
50.3
46
Minor BPS
59.7
0.38
1.9
79.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022763
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033052
9591345 - 9596946
5602