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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9664639_9666052_F

Intron Information:

Intron Rank:
126842
Intron Class:
major
Intron Phase:
Intron Coordinates:
9664639 - 9666052
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
87.5
0.84
0.7
83
25.4
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
69.1
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018336
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039213
9664569 - 9691545
26977
ENSAPLT00000044564
9664569 - 9693156
28588