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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9691021_9692704_F

Intron Information:

Intron Rank:
126846
Intron Class:
major
Intron Phase:
Intron Coordinates:
9691021 - 9692704
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
TTTGATCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACATCCTAAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.8
0.42
0.9
67.1
39.2
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
51.6
0.03
2
61.2
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018336
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044564
9664569 - 9693156
28588