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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9717693_9719151_F

Intron Information:

Intron Rank:
143083
Intron Class:
major
Intron Phase:
Intron Coordinates:
9717693 - 9719151
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
TGTTTGCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATATATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
70.8
41
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.7
0.51
1
70.3
40.4
Minor 5ss
40
-1.1
3
53.3
43.9
Minor BPS
48.8
-0
2.2
75.36
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027081
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024326
9716553 - 9722241
5689