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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9719388_9721816_F

Intron Information:

Intron Rank:
143084
Intron Class:
major
Intron Phase:
Intron Coordinates:
9719388 - 9721816
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTCAGTATA
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
GAACAAACAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.4
71.3
40.3
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
37.6
-1.4
2.8
53.2
43.3
Minor BPS
33
-1.2
1.9
44.87
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027081
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024326
9716553 - 9722241
5689