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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9732414_9737138_R

Intron Information:

Intron Rank:
140797
Intron Class:
major
Intron Phase:
Intron Coordinates:
9732414 - 9737138
Intron Length:
4725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCATCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCCATCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.7
0.71
0.8
75.4
33
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
55
0.15
1.7
63.22
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023143
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041918
9731811 - 9737718
5908