About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9766498_9768491_F

Intron Information:

Intron Rank:
137668
Intron Class:
major
Intron Phase:
Intron Coordinates:
9766498 - 9768491
Intron Length:
1994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TGTCTCTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
71.4
0.53
1
67
39.8
Major PPT
66.3
0.37
1
66.7
33.3
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
51
-0.1
1.7
59.37
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024134
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039462
9766363 - 9768612
2250