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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9766498_9769127_F

Intron Information:

Intron Rank:
137666
Intron Class:
major
Intron Phase:
Intron Coordinates:
9766498 - 9769127
Intron Length:
2630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTTCCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
65.1
0.34
1
57.8
42.8
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
88.9
1.3
0.9
95.75
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024134
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022941
9766363 - 9770117
3755