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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9861317_9863930_R

Intron Information:

Intron Rank:
128895
Intron Class:
major
Intron Phase:
Intron Coordinates:
9861317 - 9863930
Intron Length:
2614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTGTTTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
75
0.62
1
65.3
41.5
Major PPT
75.7
0.58
1
74.4
34.1
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
47.6
-0.2
2
65.33
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016485
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048242
9860491 - 9864227
3737