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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9863634_9863930_R

Intron Information:

Intron Rank:
128891
Intron Class:
major
Intron Phase:
Intron Coordinates:
9863634 - 9863930
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
GATATTAGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
54
0.1
1
59.7
32.6
Major PPT
81.1
0.7
0.9
73.5
41.9
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
42
-0.6
1.6
49.33
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016485
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035785
9863579 - 9864227
649