Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9892214_9902908_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

9892214 - 9902908

Intron Length:

10695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCATCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TAATTCATAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.3

34.6

Major BPS

100

1.24

0.5

100

Major PPT

79.5

0.66

0.9

73.4

35.8

Minor 5ss

-2.1

2.6

39.1

38.9

Minor BPS

64.5

0.53

1.6

78.87

36.9

Associated Gene:

Gene:

SFXN1

Ensembl Gene ID:

ENSAPLG00000009192

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009618

9891782 - 9917475

25694