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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9906245_9907319_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9906245 - 9907319
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGACAC
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACATCTTTATTT
Flanking Amino Acid:
NRSGDAPITVSQLGTAYVSA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.3
66
40.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.9
0.74
0.8
81.7
35.4
Minor 5ss
27.7
-2.6
2.9
33.5
41.7
Minor BPS
59.7
0.38
1.6
70.65
41

Associated Gene:

Gene:
SFXN1
Ensembl Gene ID:
ENSAPLG00000009192
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009618
9891782 - 9917475
25694