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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9907396_9908395_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9907396 - 9908395
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCG
5'SS Class:
major
3'SS Sequence:
GTCCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTCCTTTTCACA
Flanking Amino Acid:
TALGLNALTKHVSPLIGRFV
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.5
40.9
Major BPS
80
0.75
1
78.6
31
Major PPT
80.3
0.68
0.8
75
33.4
Minor 5ss
43.2
-0.7
3
56.7
47.6
Minor BPS
49.6
-0
1.7
60.49
39.9

Associated Gene:

Gene:
SFXN1
Ensembl Gene ID:
ENSAPLG00000009192
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009618
9891782 - 9917475
25694