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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9908482_9909706_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9908482 - 9909706
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATTCAACA
Flanking Amino Acid:
NCINIPLMRQRELKFGIPIT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.8
0.62
0.9
73.6
35.4
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
60.5
0.32
1.7
72.44
39.6

Associated Gene:

Gene:
SFXN1
Ensembl Gene ID:
ENSAPLG00000009192
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009618
9891782 - 9917475
25694