About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_9910560_9914986_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9910560 - 9914986
Intron Length:
4427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTATTTTAAAC
Flanking Amino Acid:
NTLEKRAFLKRFPWMSAPIQ
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
76.7
0.6
1
74.3
39.2
Minor 5ss
36.5
-1.5
3
50.8
45.5
Minor BPS
67.7
0.53
1.4
75.88
33.9

Associated Gene:

Gene:
SFXN1
Ensembl Gene ID:
ENSAPLG00000009192
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009618
9891782 - 9917475
25694